length by which Cas are allowed to shift throughout spine minimization in advance of a penalty is assigned.
If established, the JobDistributor will attempt to cease if there won't appear to be more than enough time for maxruntime_bufferfactor Work opportunities right before maxruntime occurs.
Permit outdated checkpoint documents to make up on disk. Cannot be combined with -archive_on_disk. Making use of this flag could deplete a lot of disk Area unncessarily. If this flag will not be present over the command line, then Formerly created checkpoints will likely be deleted when the next checkpoints are produced.
Use these residues as being the antigen epitope. Default is to auto-discover them throughout the set interface distance at protocol start off if epitope constraints are enabled.
dothan, al No, but i didn't acquire it for the d1 and it let me vehicle put in. One of several hypershell will not require the professional version
Really don't trouble loading pdbs and undertaking layout; just enhance weights for decoy-discrim and or indigenous rotamer recovery
Suggest into the Glycosylation Protocol no matter if to carry out very low-resolution refinement of the substrate.
Sets whether even ring conformations that are Power energy maxima are going to be sampled with the protocol. The default benefit is false; nevertheless, if the minimal energy ring conformers aren't detailed from the topology data files, all excellent ring conformers will likely be sampled anyway.
Correct = For every packable place, ClashBasedShellSelector wikipedia reference iterates through rotamers to ascertain Should the residue could clash with any designable positions.
advantage choice to use higher variety of rotamers for catalytic residues. The decided on stage will be placed on all chis of each catalytic residue.
Utilized in dna_motif_collector - RMSD cutoff for an identical view base positioned by using a motif to find out if that motif already exists in the motif library
Established all implicit solvation contributions to zero when involving the position numbers in the given IntegerVector.
Fragment uniqueness filter. On by default. Minimum CA/CB common deviation that at least 1 residue should have from all other by now-involved fragments for just a new fragment being bundled
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